PCIT: an R package for weighted gene co-expression networks based on partial correlation and information theory approaches

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Authors Nathan S. WatsonHaigh, Haja N. Kadarmideen, Antonio Reverter
Journal/Conference Name BIOINFORMATICS
Paper Category
Paper Abstract Summary: We make the PCIT algorithm (Reverter & Chan 2008), used for detecting meaningful gene-gene associations in co-expression networks, available as an R package. Automatic detection of a suitable parallel environment is used such that scripts are portable between parallel and non-parallel environments with no modification of the script. Availability and Implementation: Source code and binaries freely available (under GPL-3) for download via CRAN at http://cran.rproject.org/package=PCIT, implemented in R and supported on Linux and MS Windows.
Date of publication 2010
Code Programming Language R

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