PCIT: an R package for weighted gene co-expression networks based on partial correlation and information theory approaches
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| Authors | Nathan S. WatsonHaigh, Haja N. Kadarmideen, Antonio Reverter |
| Journal/Conference Name | BIOINFORMATICS |
| Paper Category | Other |
| Paper Abstract | Summary: We make the PCIT algorithm (Reverter & Chan 2008), used for detecting meaningful gene-gene associations in co-expression networks, available as an R package. Automatic detection of a suitable parallel environment is used such that scripts are portable between parallel and non-parallel environments with no modification of the script. Availability and Implementation: Source code and binaries freely available (under GPL-3) for download via CRAN at http://cran.rproject.org/package=PCIT, implemented in R and supported on Linux and MS Windows. |
| Date of publication | 2010 |
| Code Programming Language | R |
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