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Testing species assemblage predictions from stacked and joint species distribution models
Damaris Zurell, Niklaus E. Zimmermann, Helge Gross, Andri Baltensweiler, Thomas Sattler, Rafael O. Wüest , Journal of Biogeography , 2019
R
Free
Diversity and evolution of the transposable element repertoire in insects
Malte Petersen, David Armisén, Richard A. Gibbs, Lars Hering, Abderrahman Khila, Georg Mayer, Stephen Richards, Oliver Niehuis & Bernhard Misof , BMC Evolutionary Biology , 2019
Perl
Free
Reliable species distributions are obtainable with sparse, patchy and biased data by leveraging over species and data types
Samantha L. Peel, Nicole A. Hill, Scott D. Foster, Simon J. Wotherspoon, Claudio Ghiglione, Stefano Schiaparelli , Methods in Ecology and Evolution , 2019
R
Free
Environmental DNA metabarcoding of lake fish communities reflects long-term data from established survey methods
Bernd Hänfling, Lori Lawson Handley, Daniel S. Read, Christoph Hahn, Jianlong Li, Paul Nichols, Rosetta C. Blackman, Anna Oliver, Ian J. Winfield , Molecular Ecology , 2016
R
Free
Allelic diversity for neutral markers retains a higher adaptive potential for quantitative traits than expected heterozygosity
Ana Vilas, Andrés Pérez-Figueroa, Humberto Quesada, Armando Caballero , Molecular Ecology , 2015
Shell
Free
A Sparse Coding Model with Synaptically Local Plasticity and Spiking Neurons Can Account for the Diverse Shapes of V1 Simple Cell Receptive Fields
Joel Zylberberg , Jason Timothy Murphy, Michael Robert DeWeese , PLoS Computational Biology , 2011
Python
Free
Mechanistic model predicts tissue–environment relationships and trophic shifts in animal hydrogen and oxygen isotope ratios
Sarah Magozzi, Hannah B. Vander Zanden, Michael B. Wunder & Gabriel J. Bowen , Oecologia , 2019
R
Free
Estimating dispersal kernels using genetic parentage data
Michael Bode, David H. Williamson, Hugo B. Harrison, Nick Outram, Geoffrey P. Jones , Methods in Ecology and Evolution , 2017
Matlab
Free
A shared coevolutionary history does not alter the outcome of coalescence in experimental populations of Pseudomonas fluorescens
Meaghan Castledine, Angus Buckling, Daniel Padfield , Journal of Evolutionary Biology , 2018
R
Free
Occurrence of blood feeding terrestrial leeches in a degraded forest ecosystem
Drinkwater, Rosie; Drinkwater, Rosie; Swinfield, Tom; Deere, Nicolas J , Ecological Indicators , 2019
R
Free
Compendium of R code and data for Is prediction of species richness from Stacked Species Distribution Models biased by habitat saturation?.
Grenié M, Violle C, mUNOZ f. , Ecological Indicators , 2019
R
Free
Niche overlap of mountain hare subspecies and the vulnerability of their ranges to invasion by the European hare; the (bad) luck of the Irish
Anthony Caravaggi, Katie Leach, Francesco Santilli, Jukka Rintala, Pekka Helle, Juha Tiainen, Francesco Bisi, Adriano Martinoli, W. Ian Montgomery & Neil Reid , Biological Invasions , 2016
R
Free
Gastrointestinal ACE2, COVID-19 and IBD: Opportunity in the Face of Tragedy?
Mayur Garg, Britt Christensen, John S. Lubel , Archaea , 2020
Jupyter Notebook
Free
Effect of the environment on horizontal gene transfer between bacteria and archaea
Clara A, Fuchsman, Roy Eric Collins, Gabrielle Rocap, Willian J. Brazelton , Archaea , 2017
R
Free
Evidence for Active Maintenance of Phylotranscriptomic Hourglass Patterns in Animal and Plant Embryogenesis
Hajk-Georg Drost, Alexander Gabel, Ivo Grosse, Marcel Quint , Archaea , 2015
Perl
Free
Ecology and mode-of-life explain lifespan variation in birds and mammals
Kevin Healy, Thomas Guillerme, Sive Finlay, Adam Kanem, Séan B. A. Kelly, Deirdre McClean, David J. Kelly, Ian Donohue, Andrew L. Jackson, Natalie Cooper , Biological Journal of the Linnean Society , 2014
R
Free
Plateau: a new method for ecologically plausible climate envelopes for species distribution modelling
Mark J. Brewer, Robert B. O'Hara, Barbara J. Anderson, Ralf Ohlemüller , Ecology and Evolution , 2016
R
Free
Selective constraints on coding sequences of nervous system genes are a major determinant of duplicate gene retention in vertebrates
Julien Roux, Jialin Liu, Marc Robinson-Rechavi , Ecology and Evolution , 2016
Perl
Free
Fishing degrades size structure of coral reef fish communities
James P. W. Robinson, Ivor D. Williams, Andrew M. Edwards, Jana McPherson, Lauren Yeager, Laurent Vigliola, Russell E. Brainard, Julia K. Baum , Ecology and Evolution , 2016
R
Free
A simulation tool to scrutinise the behaviour of functional diversity metrics
Jana M. McPherson, Lauren A. Yeager, Julia K. Baum , Ecology and Evolution , 2017
R
Free
Root microbiota assembly and adaptive differentiation among European Arabidopsis populations
Thorsten Thiergart, Paloma Durán, Thomas Ellis, Nathan Vannier, Ruben Garrido-Oter, Eric Kemen, Fabrice Roux, Carlos Alonso-Blanco, Jon Ågren, Paul Schulze-Lefert & Stéphane Hacquard , Ecology and Evolution , 2019
R
Free
Imperfect pathogen detection from non-invasive skin swabs biases disease inference
Graziella V. DiRenzo, Evan H. Campbell Grant, Ana V. Longo, Christian Che-Castaldo, Kelly R. Zamudio, Karen R. Lips , Ecology and Evolution , 2017
R
Free
842Metacommunity, mainland-island system or island communities? Assessing the regional dynamics of plant communities in a fragmented landscape
Felix May, Itamar Giladi, Michael Ristow, Yaron Ziv and Florian Jeltsch , Perspectives in Plant Ecology, Evolution and Systematics , 2013
C++
Free
Nectar quality affects ant aggressiveness and biotic defense provided to plants
Fábio T. Pacelhe, Fernanda V. Costa, Frederico S. Neves, Judith Bronstein, Marco A. R. Mello , Biotropica , 2019
R
Free
Algorithmic approaches to aid species' delimitation in multidimensional morphospace
Thomas HG Ezard, Paul N Pearson & Andy Purvis , Evolutionary Biology , 2020
R
Free
Modelling coevolution in multispecies communities
Guido Caldaraelli, Paul G. Higgs, Alan J. McKane , Food Webs , 1998
R
Free
Comparison of ground cover estimates from experiment plots in cotton, sorghum and sugarcane based on images and ortho-mosaics captured by UAV
Tao Duan, Bangyiu Zheng, Wei Guo, Seishi Ninomiya, Yan Guo, Scott C. Chapman , Plant Biology , 2016
MATLAB
Free
Biogeochemical impacts of wildfires over four millennia in a Rocky Mountain subalpine watershed. New Phytologist.
Dunnette, P.V., P.E. Higuera, K.K. McLauchlan, K.M. Derr, C.E. Briles, and M.H. Keefe , Fire Ecology , 2014
Matlab
Free
FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild
Nhu H. Nguyen, Zewei Song, Scott T. Bates, Sara Branco, Leho Tedersoo, Jon Menke, Jonathan S. Schilling, Peter G. Kennedy , Frontiers in Ecology and Evolution , 2016
Python
Free
Quantifying the Role of Snowmelt in Stream Discharge in an Alaskan Watershed: An Analysis Using a Spatially Distributed Surface Hydrology Model
Chang Liao, Qianlai Zhuang , Arctic, Antarctic, and Alpine Research , 2017
C++
Free
Occurrence of blood feeding terrestrial leeches in a degraded forest ecosystem
Drinkwater, Rosie; Swinfield,Tom; Deere, Nicolas J , Forest Ecosystems , 2019
R
Free
Validating dispersal distances inferred from autoregressive occupancy models with genetic parentage assignments
Laurie A. Hall, Nathan D. Van Schmidt, Steven R. Beissinger , Wildlife Research , 2018
R
Free
Resource Allocation to Inflorescence Components Is Highly Integrated despite Differences between Allocation Currencies and Sites
Rubén Torices, Marcos Méndez , International Journal of Plant Sciences , 2014
R
Free
Plastid phylogenomic analysis of green plants: A billion years of evolutionary history
Matthew A. Gitzendanner, Pamela S. Soltis, Gane K.-S. Wong, Brad R. Ruhfel, Douglas E. Soltis , Botany , 2018
Perl
Free
The bias of a two-dimensional view: comparing two-dimensional and three-dimensional mesophyll surface area estimates using noninvasive imaging
Guillaume Théroux-Rancourt, J. Mason Earles, Matthew E. Gilbert, Maciej A. Zwieniecki, C. Kevin Boyce, Andrew J. McElrone, Craig R. Brodersen , Botany , 2017
R
Free
Age, Growth, and Size of Lake Superior Pygmy Whitefish (Prosopium coulterii)
Taylor R. Stewart, Derek H. Ogle , American Midland Naturalist , 2016
R
Free

Testing species assemblage predictions from stacked and joint species distribution models

Diversity and evolution of the transposable element repertoire in insects

Reliable species distributions are obtainable with sparse, patchy and biased data by leveraging over species and data types

Environmental DNA metabarcoding of lake fish communities reflects long-term data from established survey methods

Allelic diversity for neutral markers retains a higher adaptive potential for quantitative traits than expected heterozygosity

A Sparse Coding Model with Synaptically Local Plasticity and Spiking Neurons Can Account for the Diverse Shapes of V1 Simple Cell Receptive Fields

Mechanistic model predicts tissue–environment relationships and trophic shifts in animal hydrogen and oxygen isotope ratios

Estimating dispersal kernels using genetic parentage data

A shared coevolutionary history does not alter the outcome of coalescence in experimental populations of Pseudomonas fluorescens

Occurrence of blood feeding terrestrial leeches in a degraded forest ecosystem

Compendium of R code and data for Is prediction of species richness from Stacked Species Distribution Models biased by habitat saturation?.

Niche overlap of mountain hare subspecies and the vulnerability of their ranges to invasion by the European hare; the (bad) luck of the Irish

Gastrointestinal ACE2, COVID-19 and IBD: Opportunity in the Face of Tragedy?

Effect of the environment on horizontal gene transfer between bacteria and archaea

Evidence for Active Maintenance of Phylotranscriptomic Hourglass Patterns in Animal and Plant Embryogenesis

Ecology and mode-of-life explain lifespan variation in birds and mammals

Plateau: a new method for ecologically plausible climate envelopes for species distribution modelling

Selective constraints on coding sequences of nervous system genes are a major determinant of duplicate gene retention in vertebrates

Fishing degrades size structure of coral reef fish communities

A simulation tool to scrutinise the behaviour of functional diversity metrics

Root microbiota assembly and adaptive differentiation among European Arabidopsis populations

Imperfect pathogen detection from non-invasive skin swabs biases disease inference

842Metacommunity, mainland-island system or island communities? Assessing the regional dynamics of plant communities in a fragmented landscape

Nectar quality affects ant aggressiveness and biotic defense provided to plants

Algorithmic approaches to aid species' delimitation in multidimensional morphospace

Modelling coevolution in multispecies communities

Comparison of ground cover estimates from experiment plots in cotton, sorghum and sugarcane based on images and ortho-mosaics captured by UAV

Biogeochemical impacts of wildfires over four millennia in a Rocky Mountain subalpine watershed. New Phytologist.

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

Quantifying the Role of Snowmelt in Stream Discharge in an Alaskan Watershed: An Analysis Using a Spatially Distributed Surface Hydrology Model

Occurrence of blood feeding terrestrial leeches in a degraded forest ecosystem

Validating dispersal distances inferred from autoregressive occupancy models with genetic parentage assignments

Resource Allocation to Inflorescence Components Is Highly Integrated despite Differences between Allocation Currencies and Sites

Plastid phylogenomic analysis of green plants: A billion years of evolutionary history

The bias of a two-dimensional view: comparing two-dimensional and three-dimensional mesophyll surface area estimates using noninvasive imaging

Age, Growth, and Size of Lake Superior Pygmy Whitefish (Prosopium coulterii)