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Science NestCategoriesBehavior and Systematics
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Title Title
Date Date
  • Testing species assemblage predictions from stacked and joint species distribution models

    Damaris Zurell, Niklaus E. Zimmermann, Helge Gross, Andri Baltensweiler, Thomas Sattler, Rafael O. Wüest , Journal of Biogeography ,  2019
    R

    Free

  • Diversity and evolution of the transposable element repertoire in insects

    Malte Petersen, David Armisén, Richard A. Gibbs, Lars Hering, Abderrahman Khila, Georg Mayer, Stephen Richards, Oliver Niehuis & Bernhard Misof , BMC Evolutionary Biology ,  2019
    Perl

    Free

  • Reliable species distributions are obtainable with sparse, patchy and biased data by leveraging over species and data types

    Samantha L. Peel, Nicole A. Hill, Scott D. Foster, Simon J. Wotherspoon, Claudio Ghiglione, Stefano Schiaparelli , Methods in Ecology and Evolution ,  2019
    R

    Free

  • Environmental DNA metabarcoding of lake fish communities reflects long-term data from established survey methods

    Bernd Hänfling, Lori Lawson Handley, Daniel S. Read, Christoph Hahn, Jianlong Li, Paul Nichols, Rosetta C. Blackman, Anna Oliver, Ian J. Winfield , Molecular Ecology ,  2016
    R

    Free

  • Allelic diversity for neutral markers retains a higher adaptive potential for quantitative traits than expected heterozygosity

    Ana Vilas, Andrés Pérez-Figueroa, Humberto Quesada, Armando Caballero , Molecular Ecology ,  2015
    Shell

    Free

  • A Sparse Coding Model with Synaptically Local Plasticity and Spiking Neurons Can Account for the Diverse Shapes of V1 Simple Cell Receptive Fields

    Joel Zylberberg , Jason Timothy Murphy, Michael Robert DeWeese , PLoS Computational Biology ,  2011
    Python

    Free

  • Mechanistic model predicts tissue–environment relationships and trophic shifts in animal hydrogen and oxygen isotope ratios

    Sarah Magozzi, Hannah B. Vander Zanden, Michael B. Wunder & Gabriel J. Bowen , Oecologia ,  2019
    R

    Free

  • Estimating dispersal kernels using genetic parentage data

    Michael Bode, David H. Williamson, Hugo B. Harrison, Nick Outram, Geoffrey P. Jones , Methods in Ecology and Evolution ,  2017
    Matlab

    Free

  • A shared coevolutionary history does not alter the outcome of coalescence in experimental populations of Pseudomonas fluorescens

    Meaghan Castledine, Angus Buckling, Daniel Padfield , Journal of Evolutionary Biology ,  2018
    R

    Free

  • Occurrence of blood feeding terrestrial leeches in a degraded forest ecosystem

    Drinkwater, Rosie; Drinkwater, Rosie; Swinfield, Tom; Deere, Nicolas J , Ecological Indicators ,  2019
    R

    Free

  • Compendium of R code and data for Is prediction of species richness from Stacked Species Distribution Models biased by habitat saturation?.

    Grenié M, Violle C, mUNOZ f. , Ecological Indicators ,  2019
    R

    Free

  • Niche overlap of mountain hare subspecies and the vulnerability of their ranges to invasion by the European hare; the (bad) luck of the Irish

    Anthony Caravaggi, Katie Leach, Francesco Santilli, Jukka Rintala, Pekka Helle, Juha Tiainen, Francesco Bisi, Adriano Martinoli, W. Ian Montgomery & Neil Reid , Biological Invasions ,  2016
    R

    Free

  • Gastrointestinal ACE2, COVID-19 and IBD: Opportunity in the Face of Tragedy?

    Mayur Garg, Britt Christensen, John S. Lubel , Archaea ,  2020
    Jupyter Notebook

    Free

  • Effect of the environment on horizontal gene transfer between bacteria and archaea

    Clara A, Fuchsman, Roy Eric Collins, Gabrielle Rocap, Willian J. Brazelton , Archaea ,  2017
    R

    Free

  • Evidence for Active Maintenance of Phylotranscriptomic Hourglass Patterns in Animal and Plant Embryogenesis

    Hajk-Georg Drost, Alexander Gabel, Ivo Grosse, Marcel Quint , Archaea ,  2015
    Perl

    Free

  • Ecology and mode-of-life explain lifespan variation in birds and mammals

    Kevin Healy, Thomas Guillerme, Sive Finlay, Adam Kanem, Séan B. A. Kelly, Deirdre McClean, David J. Kelly, Ian Donohue, Andrew L. Jackson, Natalie Cooper , Biological Journal of the Linnean Society ,  2014
    R

    Free

  • Plateau: a new method for ecologically plausible climate envelopes for species distribution modelling

    Mark J. Brewer, Robert B. O'Hara, Barbara J. Anderson, Ralf Ohlemüller , Ecology and Evolution ,  2016
    R

    Free

  • Selective constraints on coding sequences of nervous system genes are a major determinant of duplicate gene retention in vertebrates

    Julien Roux, Jialin Liu, Marc Robinson-Rechavi , Ecology and Evolution ,  2016
    Perl

    Free

  • Fishing degrades size structure of coral reef fish communities

    James P. W. Robinson, Ivor D. Williams, Andrew M. Edwards, Jana McPherson, Lauren Yeager, Laurent Vigliola, Russell E. Brainard, Julia K. Baum , Ecology and Evolution ,  2016
    R

    Free

  • A simulation tool to scrutinise the behaviour of functional diversity metrics

    Jana M. McPherson, Lauren A. Yeager, Julia K. Baum , Ecology and Evolution ,  2017
    R

    Free

  • Root microbiota assembly and adaptive differentiation among European Arabidopsis populations

    Thorsten Thiergart, Paloma Durán, Thomas Ellis, Nathan Vannier, Ruben Garrido-Oter, Eric Kemen, Fabrice Roux, Carlos Alonso-Blanco, Jon Ågren, Paul Schulze-Lefert & Stéphane Hacquard , Ecology and Evolution ,  2019
    R

    Free

  • Imperfect pathogen detection from non-invasive skin swabs biases disease inference

    Graziella V. DiRenzo, Evan H. Campbell Grant, Ana V. Longo, Christian Che-Castaldo, Kelly R. Zamudio, Karen R. Lips , Ecology and Evolution ,  2017
    R

    Free

  • 842Metacommunity, mainland-island system or island communities? Assessing the regional dynamics of plant communities in a fragmented landscape

    Felix May, Itamar Giladi, Michael Ristow, Yaron Ziv and Florian Jeltsch , Perspectives in Plant Ecology, Evolution and Systematics ,  2013
    C++

    Free

  • Nectar quality affects ant aggressiveness and biotic defense provided to plants

    Fábio T. Pacelhe, Fernanda V. Costa, Frederico S. Neves, Judith Bronstein, Marco A. R. Mello , Biotropica ,  2019
    R

    Free

  • Algorithmic approaches to aid species' delimitation in multidimensional morphospace

    Thomas HG Ezard, Paul N Pearson & Andy Purvis , Evolutionary Biology ,  2020
    R

    Free

  • Modelling coevolution in multispecies communities

    Guido Caldaraelli, Paul G. Higgs, Alan J. McKane , Food Webs ,  1998
    R

    Free

  • Comparison of ground cover estimates from experiment plots in cotton, sorghum and sugarcane based on images and ortho-mosaics captured by UAV

    Tao Duan, Bangyiu Zheng, Wei Guo, Seishi Ninomiya, Yan Guo, Scott C. Chapman , Plant Biology ,  2016
    MATLAB

    Free

  • Biogeochemical impacts of wildfires over four millennia in a Rocky Mountain subalpine watershed. New Phytologist.

    Dunnette, P.V., P.E. Higuera, K.K. McLauchlan, K.M. Derr, C.E. Briles, and M.H. Keefe , Fire Ecology ,  2014
    Matlab

    Free

  • FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

    Nhu H. Nguyen, Zewei Song, Scott T. Bates, Sara Branco, Leho Tedersoo, Jon Menke, Jonathan S. Schilling, Peter G. Kennedy , Frontiers in Ecology and Evolution ,  2016
    Python

    Free

  • Quantifying the Role of Snowmelt in Stream Discharge in an Alaskan Watershed: An Analysis Using a Spatially Distributed Surface Hydrology Model

    Chang Liao, Qianlai Zhuang , Arctic, Antarctic, and Alpine Research ,  2017
    C++

    Free

  • Occurrence of blood feeding terrestrial leeches in a degraded forest ecosystem

    Drinkwater, Rosie; Swinfield,Tom; Deere, Nicolas J , Forest Ecosystems ,  2019
    R

    Free

  • Validating dispersal distances inferred from autoregressive occupancy models with genetic parentage assignments

    Laurie A. Hall, Nathan D. Van Schmidt, Steven R. Beissinger , Wildlife Research ,  2018
    R

    Free

  • Resource Allocation to Inflorescence Components Is Highly Integrated despite Differences between Allocation Currencies and Sites

    Rubén Torices, Marcos Méndez , International Journal of Plant Sciences ,  2014
    R

    Free

  • Plastid phylogenomic analysis of green plants: A billion years of evolutionary history

    Matthew A. Gitzendanner, Pamela S. Soltis, Gane K.-S. Wong, Brad R. Ruhfel, Douglas E. Soltis , Botany ,  2018
    Perl

    Free

  • The bias of a two-dimensional view: comparing two-dimensional and three-dimensional mesophyll surface area estimates using noninvasive imaging

    Guillaume Théroux-Rancourt, J. Mason Earles, Matthew E. Gilbert, Maciej A. Zwieniecki, C. Kevin Boyce, Andrew J. McElrone, Craig R. Brodersen , Botany ,  2017
    R

    Free

  • Age, Growth, and Size of Lake Superior Pygmy Whitefish (Prosopium coulterii)

    Taylor R. Stewart, Derek H. Ogle , American Midland Naturalist ,  2016
    R

    Free

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