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Science NestCategoriesBehavior and Systematics
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Title Title
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  • Identifying animal species in camera trap images using deep learning and citizen science

    Marco Willi, Ross T. Pitman, Anabelle W. Cardoso, Christina Locke, Alexandra Swanson, Amy Boyer, Marten Veldthuis, Lucy Fortson , Methods in Ecology and Evolution ,  2018
    Python

    Free

  • A convolutional neural network for detecting sea turtles in drone imagery

    Patrick C. Gray, Abram B. Fleishman, David J. Klein, Matthew W. McKown, Vanessa S. Bézy, Kenneth J. Lohmann, David W. Johnston , Methods in Ecology and Evolution ,  2018
    Python

    Free

  • A quantitative framework for investigating the reliability of empirical network construction

    Alyssa R. Cirtwill, Anna Eklöf, Tomas Roslin, Kate Wootton, Dominique Gravel , Methods in Ecology and Evolution ,  2019
    R

    Free

  • A simulation tool to scrutinise the behaviour of functional diversity metrics

    Jana M. McPherson, Lauren A. Yeager, Julia K. Baum , Methods in Ecology and Evolution ,  2017
    R

    Free

  • Active learning for classifying long-duration audio recordings of the environment

    Mahnoosh Kholghi, Yvonne Phillips, Michael Towsey, Laurianne Sitbon, Paul Roe , Methods in Ecology and Evolution ,  2018
    Java

    Free

  • Experimentally-constrained biophysical models of tonic and burst firing modes in thalamocortical neurons

    Elisabetta Iavarone , Jane Yi, Ying Shi, Bas-Jan Zandt, Christian O’Reilly, Werner Van Geit, Christian Rössert, Henry Markram, Sean L. Hill , PLoS Computational Biology ,  2019
    AGS Script

    Free

  • Dendritic Nonlinearities Reduce Network Size Requirements and Mediate ON and OFF States of Persistent Activity in a PFC Microcircuit Model

    Athanasia Papoutsi, Kyriaki Sidiropoulou, Panayiota Poirazi , PLoS Computational Biology ,  2014
    AMPL

    Free

  • External Drive to Inhibitory Cells Induces Alternating Episodes of High- and Low-Amplitude Oscillations

    Oscar J. Avella Gonzalez, Karlijn I. van Aerde, Ronald A. J. van Elburg, Simon-Shlomo Poil, Huibert D. Mansvelder, Klaus Linkenkaer-Hansen, Jaap van Pelt, Arjen van Ooyen , PLoS Computational Biology ,  2012
    MATLAB

    Free

  • Prefrontal Cortical Mechanisms Underlying Individual Differences in Cognitive Flexibility and Stability

    Diana J. N. Armbruster, Kai Ueltzhöffer, Ulrike Basten, Christian J. Fiebach , PLoS Computational Biology ,  2012
    Scilab

    Free

  • Among-strain consistency in the pace and shape of senescence in duckweed

    Patrick M. Barks, Zach W. Dempsey, Theresa M. Burg, Robert A. Laird , Journal of Ecology ,  2018
    R

    Free

  • Habitat and fishing control grazing potential on coral reefs

    James P. W. Robinson, Jamie M. McDevitt-Irwin, Jan-Claas Dajka, Jeneen Hadj-Hammou, Samantha Howlett, Alexia Graba-Landry, Andrew S. Hoey, Kirsty L. Nash , Functional Ecology ,  2019
    R

    Free

  • Trade-Offs and Coexistence: A Lottery Model Applied to Fig Wasp Communities

    A. Bradley Duthie, Karen C. Abbott and John D. Nason , American Naturalist ,  2014
    C

    Free

  • Abundance and Distribution of Transposable Elements in Two Drosophila QTL Mapping Resources

    Julie M. Cridland, Stuart J. Macdonald, Anthony D. Long, Kevin R. Thornton , Genome Biology and Evolution ,  2013
    C++

    Free

  • Kinetics and Identities of Extracellular Peptidases in Subsurface Sediments of the White Oak River Estuary, North Carolina

    Andrew D. Steen, Richard T. Kevorkian, Jordan T. Bird, Nina Dombrowski et al , Environmental Microbiology ,  2019
    R

    Free

  • Examining the evidence for decoupling between photosynthesis and transpiration during heat extremes

    Martin G. De Kauwe, Martin G. De Kauwe, Andrew J. Pitman, John E. Drake, Anna Ukkola, Anne Griebel, Elise Pendall, Suzanne Prober, Michael Roderick , Biogeosciences ,  2019
    Python

    Free

  • Suite of simple metrics reveals common movement syndromes across vertebrate taxa

    Briana Abrahms, Dana P. Seidel, Eric Dougherty, Elliott L. Hazen, Steven J. Bograd, Alan M. Wilson, J. Weldon McNutt, Daniel P. Costa, Stephen Blake, Justin S. Brashares & Wayne M. Getz , Movement Ecology ,  2017
    R

    Free

  • Validating dispersal distances inferred from autoregressive occupancy models with genetic parentage assignments

    Laurie A. Hall, Nathan D. Van Schmidt, Steven R. Beissinger , Oikos ,  2018
    R

    Free

  • Phylogenetic structure of geographical co-occurrence among New World Triatominae species, vectors of Chagas disease

    Soledad Ceccarelli, Silvia A. Justi, Jorge E. Rabinovich, José Alexandre F. Diniz Filho, Fabricio Villalobos , Journal of Biogeography ,  2020
    R

    Free

  • A Humboldtian approach to life and climate of the geological past: Estimating palaeotemperature from dental traits of mammalian communities

    Otto Oksanen, Indrė Žliobaitė, Juha Saarinen, A. Michelle Lawing, Mikael Fortelius , Journal of Biogeography ,  2019
    R

    Free

  • Contributions toward understanding the biodiversity of Passiflora in North America: Updates and a new combination from the Baja California Peninsula, Mexico and vicinity

    Harlan T. Svoboda, AJ Harris , Journal of Systematics and Evolution ,  2018
    R

    Free

  • Improving the accessibility and transferability of machine learning algorithms for identification of animals in camera trap images: MLWIC2

    Michael A. Tabak, Mohammad S. Norouzzadeh, David W. Wolfson, Erica J. Newton, Raoul K. Boughton, Jacob S. Ivan, Eric A. Odell, Eric S. Newkirk, Reesa Y. Conrey, Jennifer Stenglein , Methods in Ecology and Evolution ,  2020
    R

    Free

  • RAD genotyping reveals fine-scale genetic structuring and provides powerful population assignment in a widely distributed marine species, the American lobster (Homarus americanus)

    Laura Benestan, Thierry Gosselin, Charles Perrier, Bernard Sainte-Marie, Rémy Rochette, Louis Bernatchez , Molecular Ecology ,  2015
    HTML

    Free

  • Decision-support tools for dynamic management

    Heather Welch, Stephanie Brodie, Michael G. Jacox, Steven J. Bograd, Elliott L. Hazen , Conservation Biology ,  2019
    R

    Free

  • Neuronal Spike Timing Adaptation Described with a Fractional Leaky Integrate-and-Fire Model

    Wondimu Teka, Toma M. Marinov, Fidel Santamaria , PLoS Computational Biology ,  2014
    MATLAB

    Free

  • Function and energy consumption constrain neuronal biophysics in a canonical computation: Coincidence detection

    Michiel W. H. Remme , John Rinzel, Susanne Schreiber , PLoS Computational Biology ,  2018
    MATLAB

    Free

  • A Learning Theory for Reward-Modulated Spike-Timing-Dependent Plasticity with Application to Biofeedback

    Robert Legenstein , Dejan Pecevski , Wolfgang Maass , PLoS Computational Biology ,  2008
    Python

    Free

  • Emergence of spontaneous assembly activity in developing neural networks without afferent input

    Marcus A. Triplett, Lilach Avitan, Geoffrey J. Goodhill , PLoS Computational Biology ,  2018
    Matlab

    Free

  • UMA NOTA SOBRE OS LIMITES TERRITORIAIS DA MATA ATLÂNTICA

    Renata Lara Muylaert, Maurício Humberto Vancine, Rodrigo Bernardo, Júlia Emi Faria Oshima, Thadeu Sobral-Souza, Vinicius Rodrigues Tonetti1, Bernardo Brandão Niebuhr & Milton Cezar Ribeiro , Oecologia ,  2018
    R

    Free

  • Influence of food hoarding behavior on the over-winter survival of pikas in strongly seasonal environments

    Shawn F. Morrison, Graeme Pelchat, Aaron Donahue & David S. Hik , Oecologia ,  2008
    R

    Free

  • Plastid phylogenomic analysis of green plants: A billion years of evolutionary history

    Matthew A. Gitzendanner, Pamela S. Soltis, Gane K.-S. Wong, Brad R. Ruhfel, Douglas E. Soltis , American Journal of Botany ,  2018
    Perl

    Free

  • Insights into the assembly rules of a continent-wide multilayer network

    Marco A. R. Mello, Gabriel M. Felix, Rafael B. P. Pinheiro, Renata L. Muylaert, Cullen Geiselman, Sharlene E. Santana, Marco Tschapka, Nastaran Lotfi, Francisco A. Rodrigues & Richard D. Stevens , Ecology and Evolution ,  2019
    R

    Free

  • Social Recognition and Social Attraction in Group-Living Fishes

    Ashley J. W. Ward, Maud I.A. Kent, Michael M. Webster , Ecology and Evolution ,  2020
    R

    Free

  • Robustness of the approximate likelihood of the protracted speciation model

    C. Simonet, R. Scherrer, A. Rego-Costa, R. S. Etienne , Evolutionary Biology ,  2017
    Roff

    Free

  • Why are metapopulations so rare?

    Emanuel A. Fronhofer, Alexander Kubisch, Frank M. Hilker, Thomas Hovestadt, Hans Joachim Poethke , Population Ecology ,  2012
    Pascal

    Free

  • Plant diversity alters the representation of motifs in food webs

    Darren P. Giling, Anne Ebeling, Nico Eisenhauer, Sebastian T. Meyer, Christiane Roscher, Michael Rzanny, Winfried Voigt, Wolfgang W. Weisser & Jes Hines , Food Webs ,  2019
    R

    Free

  • Developing a high taxonomic resolution food web model to assess the functional role of forage fish in the California Current ecosystem

    Laura E.Koehn, Tomothy E. Essington, Kristin N. Marshall, Issac C. Kaplan, William J. Sydeman, Amber I. Szoboszlai, Jule A. Thayer , Food Webs ,  2016
    R

    Free

  • Temperature Modifies Consumer-Resource Interaction Strength Through Its Effects on Biological Rates and Body Mass

    Azenor Bideault, Michel Loreau, Dominique Gravel , Frontiers in Ecology and Evolution ,  2019
    R

    Free

  • Freshwater mussels increase survival of largemouth bass (Micropterus salmoides) in drying pools

    Traci P. DuBose, Kathryn Ashford, Caryn C. Vaughn , Frontiers in Ecology and Evolution ,  2019
    R

    Free

  • Interactive Effects of Microbes and Nitrogen on Panicum virgatum Root Functional Traits and Patterns of Phenotypic Selection

    Renee H. Petipas, Alan W. Bowsher, Cody S. Bekkering, Chandra N. Jack, Emily E. McLachlan, Richard Allen White III, Brett S. Younginger, Lisa K. Tiemann, Sarah E. Evans, and Maren L. Friesen , International Journal of Plant Sciences ,  2020
    Shell

    Free

  • High-Resolution Global Maps of 21st-Century Forest Cover Change

    M.C Hansen, P.V Poptapov, R. Moore, M. Hancher, S.A Turubanova, A. Tyukavina, D.Thau, S.V Stehman , Tropical Ecology ,  2013
    R

    Free

  • Large male proboscis monkeys have larger noses but smaller canines

    Ikki Matsuda, Danica J. Stark, Diana A. Ramirez Saldivar, Augustine Tuuga, Senthilvel K. S. S. Nathan, Benoit Goossens, Carel P. van Schaik & Hiroki Koda , International Zoo Yearbook ,  2020
    Python

    Free

  • Contributions toward understanding the biodiversity of Passiflora in North America: Updates and a new combination from the Baja California Peninsula, Mexico and vicinity

    Harlan T. Svoboda, AJ Harris , Journal of Systematics and Evolution ,  2018
    R

    Free

  • Testing species assemblage predictions from stacked and joint species distribution models

    Damaris Zurell, Niklaus E. Zimmermann, Helge Gross, Andri Baltensweiler, Thomas Sattler, Rafael O. Wüest , Journal of Biogeography ,  2019
    R

    Free

  • Picky hitch-hikers: vector choice leads to directed dispersal and fat-tailed kernels in a passively dispersing mite

    Emanuel A. Fronhofer, Ellen B. Sperr, Anna Kreis, Manfred Ayasse, Hans Joachim Poethke, Marco Tschapka , Oikos ,  2013
    Pascal

    Free

  • A novel method for assessing climate change impacts in ecotron experiments

    Inne Vanderkelen, Jakob Zscheischler, Lukas Gudmundsson, Klaus Keuler, Francois Rineau, Natalie Beenaerts, Jaco Vangronsveld, Sara Vicca & Wim Thiery , Biogeosciences ,  2020
    MATLAB

    Free

  • Improving North American terrestrial CO2 flux diagnosis using spatial structure in land surface model residuals

    T. W. Hilton, K. J. Davis, N. M. Urban , Biogeosciences ,  2013
    R

    Free

  • Mapping of Multiple Complementary Sex Determination Loci in a Parasitoid Wasp

    Cyril Matthey-Doret, Casper J van der Kooi, Daniel L Jeffries, Jens Bast, Alice B Dennis, Christoph Vorburger, Tanja Schwander , Genome Biology and Evolution ,  2019
    Shell

    Free

  • Evolution of Dosage Compensation in Anolis carolinensis, a Reptile with XX/XY Chromosomal Sex Determination

    Shawn M. Rupp, Timothy H. Webster, Kimberly C. Olney, Elizabeth D. Hutchins, Kenro Kusumi, Melissa A. Wilson Sayres , Genome Biology and Evolution ,  2016
    Python

    Free

  • Predicting to new environments: tools for visualising model behaviour and impacts on mapped distributions

    Damaris Zurell, Jane Elith, Boris Schröder , Diversity and Distributions ,  2012
    R

    Free

  • Fire history and plant community composition outweigh decadal multi-factor global change as drivers of microbial composition in an annual grassland

    Clara Qin, Kai Zhu, Nona R. Chiariello, Christopher B. Field, Kabir G. Peay , Journal of Ecology ,  2019
    R

    Free

  • Spike and burst coding in thalamocortical relay cells.

    Fleur Zeldenrust , Pascal Chameau, Wytse J. Wadman , PLoS Computational Biology ,  2018
    AMPL

    Free

  • A Voltage-Based STDP Rule Combined with Fast BCM-Like Metaplasticity Accounts for LTP and Concurrent “Heterosynaptic” LTD in the Dentate Gyrus In Vivo

    Peter Jedlicka , Lubica Benuskova , Wickliffe C. Abraham , PLoS Computational Biology ,  2015
    AMPL

    Free

  • Models of Neocortical Layer 5b Pyramidal Cells Capturing a Wide Range of Dendritic and Perisomatic Active Properties

    Etay Hay , Sean Hill, Felix Schürmann, Henry Markram, Idan Segev , PLoS Computational Biology ,  2011
    AGS Script

    Free

  • Synaptic Plasticity Can Produce and Enhance Direction Selectivity

    Sean Carver , Eatai Roth, Noah J Cowan, Eric S Fortune , PLoS Computational Biology ,  2008
    MATLAB

    Free

  • Emergence of spontaneous assembly activity in developing neural networks without afferent input

    Marcus A. Triplett, Lilach Avitan, Geoffrey J. Goodhill , PLoS Computational Biology ,  2018
    Matlab

    Free

  • Power-Law Dynamics of Membrane Conductances Increase Spiking Diversity in a Hodgkin-Huxley Model

    Wondimu Teka, David Stockton, Fidel Santamaria , PLoS Computational Biology ,  2016
    MATLAB

    Free

  • Deterministic response strategies in trial-and-error learning

    Holger Mohr, Katharina Zwosta, Dimitrije Markovic, Sebastian Bitzer, Uta Wolfensteller, Hannes Ruge , PLoS Computational Biology ,  2018
    MATLAB

    Free

  • JTK_CYCLE: An Efficient Nonparametric Algorithm for Detecting Rhythmic Components in Genome-Scale Data Sets

    Michael E. Hughes, John B. Hogenesch, Karl Kornacker , PLoS Computational Biology ,  2010
    Python

    Free

  • Seizure pathways: A model-based investigation

    Philippa J. Karoly , Levin Kuhlmann, Daniel Soudry, David B. Grayden, Mark J. Cook, Dean R. Freestone , PLoS Computational Biology ,  2018
    MATLAB

    Free

  • Comparative genomics in the Asteraceae reveals little evidence for parallel evolutionary change in invasive taxa

    Kathryn A. Hodgins, Dan G. Bock, Min A. Hahn, Sylvia M. Heredia, Kathryn G. Turner, Loren H. Rieseberg , Molecular Ecology ,  2014
    R

    Free

  • Local temperature and ecological similarity drive distributional dynamics of tropical mammals worldwide

    Lydia Beaudrot, Miguel A. Acevedo, Jean-Philippe Lessard, Alex Zvoleff, Patrick A. Jansen, Douglas Sheil, Francesco Rovero, Timothy O’Brien, Eileen Larney, Christine Fletcher, Sandy Andelman, Jorge Ahumada , Global Ecology and Biogeography ,  2019
    R

    Free

  • DYNAMITE: a phylogenetic tool for identification of dynamic transmission epicenters

    Brittany Rife Magalis, Simone Marini, Marco Salemi, Mattia Prosperi , Methods in Ecology and Evolution ,  2021
    R

    Free

  • Improving the accessibility and transferability of machine learning algorithms for identification of animals in camera trap images: MLWIC2

    Michael A. Tabak, Mohammad S. Norouzzadeh, David W. Wolfson, Erica J. Newton, Raoul K. Boughton, Jacob S. Ivan, Eric A. Odell, Eric S. Newkirk, Reesa Y. Conrey, Jennifer Stenglein , Methods in Ecology and Evolution ,  2020
    R

    Free

  • The multiple population genetic and demographic routes to islands of genomic divergence

    Claudio S. Quilodrán, Kristen Ruegg, Ashley T. Sendell-Price, Eric C. Anderson, Tim Coulson, Sonya M. Clegg , Methods in Ecology and Evolution ,  2019
    R

    Free

  • Plants In Trait Analysis (PITA)

    Nicole Diaz; Jordan Holmes , Methods in Ecology and Evolution ,  2019
    Shell

    Free

  • Can time-to-detection models with fewer survey replicates provide a robust alternative to traditional site-occupancy models?

    Dominic A. W. Henry, Alan T. K. Lee, Res Altwegg , Methods in Ecology and Evolution ,  2020
    R

    Free

  • Imperfect pathogen detection from non-invasive skin swabs biases disease inference

    Graziella V. DiRenzo, Evan H. Campbell Grant, Ana V. Longo, Christian Che-Castaldo, Kelly R. Zamudio, Karen R. Lips , Methods in Ecology and Evolution ,  2017
    R

    Free

  • Dealing with high uncertainty in qualitative network models using Boolean analysis

    Nadiah P. Kristensen, Ryan A. Chisholm, Eve McDonald-Madden , Methods in Ecology and Evolution ,  2019
    R

    Free

  • An r package and online resource for macroevolutionary studies using the ray-finned fish tree of life

    Jonathan Chang, Daniel L. Rabosky, Stephen A. Smith, Michael E. Alfaro , Methods in Ecology and Evolution ,  2019
    R

    Free

  • A practical guide to structured expert elicitation using the IDEA protocol

    Victoria Hemming, Mark A. Burgman, Anca M. Hanea, Marissa F. McBride, Bonnie C. Wintle , Methods in Ecology and Evolution ,  2017
    R

    Free

  • babette: BEAUti 2, BEAST2 and Tracer for R

    Richèl J. C. Bilderbeek, Rampal S. Etienne , Methods in Ecology and Evolution ,  2018
    R

    Free

  • NLMR and landscapetools: An integrated environment for simulating and modifying neutral landscape models in R

    Marco Sciaini, Matthias Fritsch, Cédric Scherer, Craig Eric Simpkins , Methods in Ecology and Evolution ,  2018
    NetLogo

    Free

  • mfSBA: Multifractal analysis of spatial patterns in ecological communities

    Leonardo A. Saravia , Methods in Ecology and Evolution ,  2014
    C++

    Free

  • Functional ecology and imperfect detection of species

    Tobias Roth, Eric Allan, Peter B. Pearman, Valentin Amrhein , Methods in Ecology and Evolution ,  2017
    R

    Free

  • Phylogenomics from low-coverage whole-genome sequencing

    Feng Zhang, Yinhuan Ding, Chao-Dong Zhu, Xin Zhou, Michael C. Orr, Stefan Scheu, Yun-Xia Luan , Methods in Ecology and Evolution ,  2019
    Shell

    Free

  • Measuring microenvironments for global change: DIY environmental microcontroller units (EMUs)

    James G. Mickley, Timothy E. Moore, Carl D. Schlichting, Amber DeRobertis, Emilia N. Pfisterer, Robert Bagchi , Methods in Ecology and Evolution ,  2018
    Lua

    Free

  • babette: BEAUti 2, BEAST2 and Tracer for R

    Richèl J. C. Bilderbeek, Rampal S. Etienne , Methods in Ecology and Evolution ,  2018
    R

    Free

  • A meta-analysis of changes in bacterial and archaeal communities with time

    Ashley Shade, J Gregory Caporaso, Jo Handelsman, Rob Knight, Noah Fierer , ISME Journal ,  2013
    R

    Free

  • Individual immune selection pressure has limited impact on seasonal influenza virus evolution

    Alvin X. Han, Sebastian Maurer-Stroh,Colin A. Russell , Nature Ecology and Evolution ,  2018
    Jupyter Notebook

    Free

  • Social support drives female dominance in the spotted hyaena

    Colin Vullioud, Eve Davidian, Bettina Wachter, François Rousset, Alexandre Courtiol, Oliver P. Höner , Nature Ecology and Evolution ,  2018
    R

    Free

  • Widespread inhibition of daytime ecosystem respiration

    Trevor F. Keenan, Mirco Migliavacca, Dario Papale, Dennis Baldocchi, Markus Reichstein, Margaret Torn & Thomas Wutzler , Nature Ecology and Evolution ,  2019
    MATLAB

    Free

  • Accounting for Phylogenetic Uncertainty in Biogeography: A Bayesian Approach to Dispersal-Vicariance Analysis of the Thrushes

    Johan A A Nylander,Urban Olsson,Per Alström,Isabel Sanmartín , Systematic Biology ,  2008
    Perl

    Free

  • Linking phytoplankton community metabolism to the individual size distribution

    Daneil Padfield, Angus Buckling, Ruth Warfield, Chris Lowe, Gabriel Yvon-Durocher , Ecology Letters ,  2018
    R

    Free

  • Network spandrels reflect ecological assembly

    Daniel S. Maynard, Carlos A. Serván, Stefano Allesina , Ecology Letters ,  2018
    R

    Free

  • Blobal photsynthetic capacity is optimized to the environment

    Nicholas G. Smith, Trevor F. Keenan, I.Colin Prentice, Han Wang , Ecology Letters ,  2019
    R

    Free

  • Comparison of computational methods for the identification of topologically assocaiting domains

    Marie Zufferey, Daniele Tavernari, Elisa Oricchio, Giovanni Ciriello , Genome Biology ,  2018
    R

    Free

  • Performance of multistate mark–recapture models for temporary emigration in the presence of survival costs

    Klaus Henle, Bernd Gruber , Methods in Ecology and Evolution ,  2017
    C++

    Free

  • When can we trust population trends? A method for quantifying the effects of sampling interval and duration

    Hannah S. Wauchope, Tatsuya Amano, William J. Sutherland, Alison Johnston , Methods in Ecology and Evolution ,  2019
    R

    Free

  • For everything there is a season: Analysing periodic mortality patterns with the cyclomortr package

    Eliezer Gurarie, Peter R. Thompson, Allicia P. Kelly, Nicholas C. Larter, William F. Fagan, Kyle Joly , Methods in Ecology and Evolution ,  2019
    R

    Free

  • Estimating Diversification Rates on Incompletely Sampled Phylogenies: Theoretical Concerns and Practical Solutions

    Jonathan Chang, Daniel L Rabosky, Michael E Alfaro , Methods in Ecology and Evolution ,  2019
    Python

    Free

  • dispRity: A modular R package for measuring disparity

    Thomas Guillerme , Methods in Ecology and Evolution ,  2019
    HTML

    Free

  • Paleontological baselines for evaluating extinction risk in the modern oceans

    Seth Dinnegan, Sean C. Anderson, Paul G. Harnik, Carl Suimpson, Derek P. Tittensor , Methods in Ecology and Evolution ,  2015
    Jupyter Notebook

    Free

  • mfSBA: Multifractal analysis of spatial patterns in ecological communities

    Leonardo A. Saravia , Methods in Ecology and Evolution ,  2014
    C++

    Free

  • Clustering and correlations: Inferring resilience from spatial patterns in ecosystems

    Sumithra Sankaran, Sabiha Majumder, Ashwin Viswanathan, Vishwesha Guttal , Methods in Ecology and Evolution ,  2019
    R

    Free

  • raptr: Representative and adequate prioritization toolkit in R

    Jeffrey O. Hanson, Jonathan R. Rhodes, Hugh P. Possingham, Richard A. Fuller , Methods in Ecology and Evolution ,  2017
    R

    Free

  • Sensitivity of binomial N-mixture models to overdispersion: The importance of assessing model fit

    Jonas Knape, Debora Arlt, Frédéric Barraquand, Åke Berg, Mathieu Chevalier, Tomas Pärt, Alejandro Ruete, Michał Żmihorski , Methods in Ecology and Evolution ,  2018
    R

    Free

  • The multiple population genetic and demographic routes to islands of genomic divergence

    Claudio S. Quilodrán, Kristen Ruegg, Ashley T. Sendell-Price, Eric C. Anderson, Tim Coulson, Sonya M. Clegg , Methods in Ecology and Evolution ,  2019
    R

    Free

  • Automatic generation of evolutionary hypotheses using mixed Gaussian phylogenetic models

    Venelin Mitov, Krzysztof Bartoszek, and Tanja Stadler , Methods in Ecology and Evolution ,  2019
    R

    Free

  • performance: An R Package for Assessment, Comparison and Testing of Statistical Models

    Daniel Lüdecke, Mattan S. Ben-Shachar, Indrajeet Patil, Philip Waggoner, and Dominique Makowski , Methods in Ecology and Evolution ,  2021
    R

    Free

  • The r package divDyn for quantifying diversity dynamics using fossil sampling data

    Ádám T. Kocsis, Carl J. Reddin, John Alroy, Wolfgang Kiessling , Methods in Ecology and Evolution ,  2019
    R

    Free

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