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Science NestCategoriesAnimal Science and Zoology
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Title Title
Date Date
  • CACNA1C gene regulates behavioral strategies in operant rule learning

    Georgia Koppe, Anne Stephanie Mallien, Stefan Berger, Dusan Bartsch, Peter Gass, Barbara Vollmayr, Daniel Durstewitz , Experimental Animals ,  2017
    Matlab

    Free

  • BioNames: linking taxonomy, texts, and trees

    Roderic D.M. Page , New Zealand Journal of Zoology ,  2013
    DOT

    Free

  • Complex responses of global insect pests to climate change

    Philipp Lehmann, Tea Ammunét, Madeleine Barton, Andrea Battisti, Sanford D Eigenbrode, Jane Uhd Jepsen, Gregor Kalinkat, Seppo Neuvonen, Pekka Niemelä, John S Terblanche, Bjørn Økland, Christer Björkman , Zoology ,  2020
    R

    Free

  • Rethinking “normal”: The role of stochasticity in the phenology of a synchronously breeding seabird

    Casey Youngflesh, Stephanie Jenouvrier, Jefferson T. Hinke, Lauren DuBois, Judy St. Leger, Wayne Z. Trivelpiece, Susan G. Trivelpiece, Heather J. Lynch , Journal of Animal Ecology ,  2017
    R

    Free

  • Habitat selection can reduce effects of extreme climatic events in a long-lived shorebird

    Liam D. Bailey, Bruno J. Ens, Christiaan Both, Dik Heg, Kees Oosterbeek, Martijn van de Pol , Journal of Animal Ecology ,  2019
    R

    Free

  • Behavioural variation and plasticity along an invasive ant introduction pathway

    Antoine Felden, Carolina I. Paris, David G. Chapple, John Haywood, Andrew V. Suarez, Neil D. Tsutsui, Philip J. Lester, Monica A. M. Gruber , Journal of Animal Ecology ,  2018
    R

    Free

  • A framework to estimate the likelihood of species interactions and behavioural responses using animal-borne acoustic telemetry transceivers and accelerometers

    Amanda N. Barkley, Franziska Broell, Harri Pettitt‐Wade, Yuuki Y. Watanabe, Marianne Marcoux, Nigel E. Hussey , Journal of Animal Ecology ,  2019
    R

    Free

  • Estimating contributions of pelagic and benthic pathways to consumer production in coupled marine food webs

    Jessica I. Duffill Telsnig, Simon Jennings, Aileen C. Mill, Nicola D. Walker, Andrew C. Parnell, Nicholas V. C. Polunin , Journal of Animal Ecology ,  2018
    R

    Free

  • Further mismeasures of animal contests: a new framework for assessment strategies

    Kenneth James Chapin, Paulo Enrique Cardoso Peixoto, Mark Briffa , Behavioral Ecology ,  2019
    R

    Free

  • Saami reindeer herders cooperate with social group members and genetic kin

    Matthew G. Thomas, Marius Warg Næss, Bård-Jørgen Bårdsen, Ruth Mace , Behavioral Ecology ,  2015
    R

    Free

  • How big is a genus? Towards a nomothetic systematics

    Julia D Sigwart, Mark D Sutton, K D Bennett , Zoological Journal of the Linnean Society ,  2017
    C++

    Free

  • Chemical composition, organic matter digestibility and fatty acid content of evening primrose (Oenothera paradoxa) during its growth cycle

    P.G. Peiretti, G.B. Palmegiano, G. Masoero , Animal Feed Science and Technology ,  2004
    Jupyter Notebook

    Free

  • A juvenile Tristan albatross (Diomedea dabbenena) on land at the Crozet Islands

    Alexander L. Bond, Christopher Taylor, David Kinchin-Smith, Derren Fox, Emma Witcutt, Peter G. Ryan, Simon P. Loader, Henri Weimerskirch , Ibis ,  2020
    R

    Free

  • Genotyping ofBartonellabacteria and their animal hosts: current status and perspectives

    M. KOSOY, C. MCKEE, L. ALBAYRAK, Y. FOFANOV , Parasitology ,  2017
    R

    Free

  • Genetic dissection of assortative mating behaviour

    Richard M. Merrill, Pasi Rastas, Simon H. Martin, Maria C. Melo, Sarah Barker, John Davey, W. Owen McMillan, Chris D. Jiggins , Parasitology ,  2019
    R

    Free

  • Developmental Integration and the Evolution of Pleiotropy

    JAMES M. CHEVERUD , Journal of Experimental Zoology Part B: Molecular and Developmental Evolution ,  2007
    HTML

    Free

  • Acculturation drives the evolution of intergroup conflict

    Gil J. B. Henriques, Burton Simon, Yaroslav Ispolatov, Michael Doebeli , Zoology ,  2019
    MATLAB

    Free

  • Trait overdispersion and the role of sociality in the assembly of social spider communities across the Americas

    Philippe Fernandez-Fournier, Jennifer Guevara, Catherine Hoffman, Leticia Avilés , Zoology ,  2018
    R

    Free

  • Phylogenomic Analysis of a Putative Missing Link Sparks Reinterpretation of Leech Evolution

    Anna J Phillips, Alex Dornburg, Katerina L Zapfe, Frank E Anderson, Samuel W James, Christer Erséus, Emily Moriarty Lemmon, Alan R Lemmon, Bronwyn W Williams , Zoology ,  2019
    Java

    Free

  • Phylogenomic Analysis of a Putative Missing Link Sparks Reinterpretation of Leech Evolution

    Anna J Phillips, Alex Dornburg, Katerina L Zapfe, Frank E Anderson, Samuel W James, Christer Erséus, Emily Moriarty Lemmon, Alan R Lemmon, Bronwyn W Williams , Invertebrate Zoology ,  2019
    Java

    Free

  • Species interactions cause non-additive effects of multiple environmental stressors on communities

    Patrick L. Thompson, Megan M. MacLennan, Rolf D. Vinebrooke , Zoology ,  2018
    R

    Free

  • Detecting host-parasitoid interactions in an invasive Lepidopteran using nested tagging DNA metabarcoding

    James J. N. Kitson, Christoph Hahn, Richard J. Sands, Nigel A. Straw, Darren M. Evans, David H. Lunt , Zoology ,  2018
    HTML

    Free

  • Different colour morphs of the poison frogAndinobates bombetes(Dendrobatidae) are similarly effective visual predator deterrents

    Santiago Casas-Cardona, Roberto Márquez, Fernando Vargas-Salinas , Ethology ,  2018
    R

    Free

  • A Practical Approach for Designing Breeding Groups to Maximize Genetic Diversity in a Large Colony of Captive Rhesus Macaques (Macaca mulatto)

    Amanda Vinson, Michael J Raboin , Journal of the American Association for Laboratory Animal Science ,  2015
    R

    Free

  • Single cell sequencing of radial glia progeny reveals diversity of newborn neurons in the adult zebrafish brain

    Christian Lange, Fabian Rost, Anja Machate, Susanne Reinhardt, Matthias Lesche, Anke Weber, Veronika Kuscha, Andreas Dahl, Steffen Rulands, Michael Brand , Zebrafish ,  2020
    Jupyter Notebook

    Free

  • Coordinated Expression of Two Types of Low-Threshold K+ Channels Establishes Unique Single Spiking of Mauthner Cells among Segmentally Homologous Neurons in the Zebrafish Hindbrain

    Takaki Watanabe, Takashi Shimazaki, Yoichi Oda , Zebrafish ,  2017
    AMPL

    Free

  • Sustained Rhythmic Brain Activity Underlies Visual Motion Perception in Zebrafish

    Verónica Pérez-Schuster, Anirudh Kulkarni, Morgane Nouvian, Sebastián A. Romano, Konstantinos Lygdas, Adrien Jouary, Mario Dipoppa, Thomas Pietri, Mathieu Haudrechy, Virginie Candat, Jonathan Boulanger-Weill, Vincent Hakim, Germán Sumbre , Zebrafish ,  2016
    MATLAB

    Free

  • Heat oscillations driven by the embryonic cell cycle arise from the energetic costs of signaling

    Jonathan Rodenfels, Karla M. Neugebauer, Jonathon Howard , Zebrafish ,  2019
    R

    Free

  • Cellular reprogramming for successful CNS axon regeneration is driven by a temporally changing cast of transcription factors

    Sumona P. Dhara, Andrea Rau, Michael J. Flister, Nicole M. Recka, Michael D. Laiosa, Paul L. Auer, Ava J. Udvadia , Zebrafish ,  2019
    R

    Free

  • Neural signatures of sleep in zebrafish

    Louis C. Leung, Gordon X. Wang, Romain Madelaine, Gemini Skariah, Koichi Kawakami, Karl Deisseroth, Alexander E. Urban, Philippe Mourrain , Zebrafish ,  2019
    MATLAB

    Free

  • BgeeDB, an R package for retrieval of curated expression datasets and for gene list expression localization enrichment tests

    Andrea Komljenovic, Julien Roux, Julien Wollbrett, Marc Robinson-Rechavi, Frederic B. Bastian , Zebrafish ,  2018
    R

    Free

  • Network modeling of kinase inhibitor polypharmacology reveals pathways targeted in chemical screens

    Oana Ursu, Sara J. C. Gosline, Neil Beeharry, Lauren Fink, Vikram Bhattacharjee, Shao-shan Carol Huang, Yan Zhou, Tim Yen, Ernest Fraenkel , Ursus ,  2017
    HTML

    Free

  • Description of a new species of the genus Chaetostoma from the Orinoco River drainage with comments on Chaetostoma milesi Fowler

    GUSTAVO A. BALLEN, ALEXANDER URBANO-BONILLA, JAVIER A. MALDONADO-OCAMPO , Zootaxa ,  2016
    R

    Free

  • Underwater compensation for exaggerated weaponry: The role of morphology and environment on crab locomotor performance

    Fernando Benso-Lopes, Sandro Santos, Alexandre V. Palaoro , Journal of Experimental Zoology Part A: Ecological Genetics and Physiology ,  2019
    R

    Free

  • Metabolic and Stress Physiology of Cottonmouth Snakes, Agkistrodon piscivorous

    Molly Richard , Journal of Experimental Zoology Part A: Ecological Genetics and Physiology ,  2019
    HTML

    Free

  • Systematics of the Spider Family Deinopidae with a Revision of the Genus Menneus

    Jonathan A. Coddington, Matjaz Kuntner, Brent D. Opell , Records of the Australian Museum ,  2012
    HTML

    Free

  • Species diversity as a surrogate for the conservation of phylogenetic and functional diversity in terrestrial vertebrates across the Americas

    Giovanni Rapacciuolo, Catherine H. Graham, Julie Marin, Jocelyn E. Behm, Gabriel C. Costa, S. Blair Hedges, Matthew R. Helmus, Volker C. Radeloff, Bruce E. Young, Thomas M. Brooks , Species Diversity ,  2018
    R

    Free

  • Sympatric parallel diversification of major oak clades in the Americas and the origins of Mexican species diversity

    Andrew L. Hipp, Paul S. Manos, Antonio González‐Rodríguez, Marlene Hahn, Matthew Kaproth, John D. McVay, Susana Valencia Avalos, Jeannine Cavender‐Bares , Species Diversity ,  2017
    R

    Free

  • Heterogeneous urban green areas are bird diversity hotspots: insights using continental-scale citizen science data

    Corey T. Callaghan, Gilad Bino, Richard E. Major, John M. Martin, Mitchell B. Lyons, Richard T. Kingsford , Species Diversity ,  2019
    R

    Free

  • Phylogenetic structure of geographic co-occurrence among new world Triatominae species, vectors of chagas disease

    Soledad Ceccarelli, Silvia A. Justi, Jorge E. Rabinovich, José Alexandre F. Diniz Filho, Fabricio Villalobos , Species Diversity ,  2020
    R

    Free

  • Our house is burning: discrepancy in climate change vs biodiversity coverage in the media

    Pierre Legagneux, Nicolas Casajus, Kevin Cazelles, Clément Chevallier, Marion Chevrinais, Lorelei Guéry, Claire Jacquet, Mikael Jaffré, Marie-José Naud, Fanny Noisette, Pascale Ropars, Steve Vissault, Philippe Archambault, Joel Bêty, Dominique Berteaux, Dominique Gravel , Biodiversitas ,  2018
    R

    Free

  • Accounting for variable recruitment and fishing mortality in length-based stock assessments for data-limited fisheries

    Merrill B. Rudd, James T. Thorson , Journal of Fisheries and Aquatic Science ,  2017
    R

    Free

  • Spatial semiparametric models improve estimates of species abundance and distribution

    Andrew Olaf Shelton, James T. Thorson, Eric J. Ward, Blake E. Feist , Journal of Fisheries and Aquatic Science ,  2014
    R

    Free

  • Joint dynamic species distribution models: a tool for community ordination and spatiotemporal monitoring

    James T. Thorson, James N. Ianelli, Elise A. Larsen, Leslie Ries, Mark D. Scheuerell, Cody Szuwalski, Elise F. Zipkin , Journal of Fisheries and Aquatic Science ,  2016
    C++

    Free

  • Improving estimates of population status and trend with superensemble models

    Sean C Anderson, Andrew B Cooper, Olaf P Jensen, Cóilín Minto, James T Thorson, Jessica C Walsh, Jamie Afflerbach, Mark Dickey-Collas, Kristin M Kleisner, Catherine Longo, Giacomo Chato Osio, Daniel Ovando, Iago Mosqueira, Andrew A Rosenberg, Elizabeth R Selig , Journal of Fisheries and Aquatic Science ,  2017
    R

    Free

  • Black swans in space: modelling spatiotemporal processes with extremes

    Sean C. Anderson, Eric J. Ward , Journal of Fisheries and Aquatic Science ,  2018
    C++

    Free

  • A multi-year hierarchical Bayesian mark-recapture model using recurring salmonid behavior to account for sparse or missing data

    Bryce N. Oldemeyer, Timothy Copeland, Brian P. Kennedy , Journal of Fisheries and Aquatic Science ,  2018
    R

    Free

  • Validation of a hidden Markov model for the geolocation of Atlantic cod

    Chang Liu, Geoffrey W. Cowles, Douglas R. Zemeckis, Steven X. Cadrin, Micah J. Dean , Journal of Fisheries and Aquatic Science ,  2017
    Matlab

    Free

  • Smoothing Population Size Estimates for Time-Stratified Mark-Recapture Experiments Using Bayesian P-Splines

    Simon J. Bonner, Carl J. Schwarz , Journal of Fisheries and Aquatic Science ,  2011
    R

    Free

  • Spatial delay-difference models for estimating spatiotemporal variation in juvenile production and population abundance

    James T. Thorson, James N. Ianelli, Stephan B. Munch, Kotaro Ono, Paul D. Spencer , Journal of Fisheries and Aquatic Science ,  2015
    C++

    Free

  • Nonstationary effects of ocean temperature on Pacific salmon productivity

    Michael A. Litzow, Lorenzo Ciannelli, Curry J. Cunningham, Bethany Johnson, Patricia Puerta , Journal of Fisheries and Aquatic Science ,  2019
    R

    Free

  • No-take marine reserves can enhance population persistence and support the fishery of abalone

    Marisa Rossetto, Fiorenza Micheli, Andrea Saenz-Arroyo, Jose Antonio Espinoza Montes, Giulio Alessandro De Leo , Journal of Fisheries and Aquatic Science ,  2015
    R

    Free

  • Determination of fish movement patterns from tag recoveries using maximum likelihood estimators

    Ray Hilborn , Journal of Fisheries and Aquatic Science ,  2008
    R

    Free

  • Accounting for variable recruitment and fishing mortality in length-based stock assessments for data-limited fisheries

    Merrill B. Rudd, James T. Thorson , Journal of Fisheries and Aquatic Science ,  2017
    R

    Free

  • Empirical, spatially explicit natural mortality and movement rate estimates for the threatened Gulf sturgeon (Acipenser oxyrinchus desotoi)

    Merrill B. Rudd, Robert N.M. Ahrens, William E. Pine, Stephania K. Bolden , Journal of Fisheries and Aquatic Science ,  2014
    R

    Free

  • An improved method for predicting the accuracy of genetic stock identification

    Eric C. Anderson, Robin S. Waples, Steven T. Kalinowski , Journal of Fisheries and Aquatic Science ,  2008
    C

    Free

  • Detecting regime shifts in fish stock dynamics

    Tommi Perälä, Anna Kuparinen , Journal of Fisheries and Aquatic Science ,  2015
    C++

    Free

  • Managing mixed-stock fisheries: genotyping multi-SNP haplotypes increases power for genetic stock identification

    Garrett J. McKinney, James E. Seeb, Lisa W. Seeb , Journal of Fisheries and Aquatic Science ,  2017
    Python

    Free

  • Hard choices in assessing survival past dams a comparison of single- and paired-release strategies

    Joseph Zydlewski, Daniel Stich, Douglas Sigourney , Journal of Fisheries and Aquatic Science ,  2016
    R

    Free

  • Empirical, spatially explicit natural mortality and movement rate estimates for the threatened Gulf sturgeon (Acipenser oxyrinchus desotoi)

    Merrill B. Rudd, Robert N.M. Ahrens, William E. Pine, Stephania K. Bolden , Journal of Fisheries and Aquatic Science ,  2014
    R

    Free

  • Understanding inter-reach variation in brown trout (Salmo trutta) mortality rates using a hierarchical Bayesian state-space model

    Victor Bret, Hervé Capra, Véronique Gouraud, Nicolas Lamouroux, Jérémy Piffady, Laurence Tissot, Etienne Rivot , Journal of Fisheries and Aquatic Science ,  2017
    R

    Free

  • Applying Bayesian spatiotemporal models to fisheries bycatch in the Canadian Arctic

    Aurelie Cosandey-Godin, Elias Teixeira Krainski, Boris Worm, Joanna Mills Flemming , Journal of Fisheries and Aquatic Science ,  2014
    R

    Free

  • Conservation Risk and Uncertainty in Recovery Prospects for a Collapsed and Culturally Important Salmon Population in a Mixed-Stock Fishery

    Brendan Connors, William Atlas, Christina Melymick, Megan Moody, Jason Moody, Alejandro Frid , Journal of Fisheries and Aquatic Science ,  2019
    R

    Free

  • Incorporating harvest-population diversity trade-offs into harvest policy analyses of salmon management in large river basins

    Brendan M. Connors, Benjamin Staton, Lewis Coggins, Carl Walters, Mike Jones, Daniel Gwinn, Matt Catalano, Steve Fleischman , Journal of Fisheries and Aquatic Science ,  2020
    R

    Free

  • Use of the stratified-Petersen estimator in fisheries management: estimating the number of pink salmon (Oncorhynchus gorbuscha) spawners in the Fraser River

    Carl James Schwarz, Carolyn Gail Taylor , Journal of Fisheries and Aquatic Science ,  2011
    R

    Free

  • Use of the stratified-Petersen estimator in fisheries management: estimating the number of pink salmon (Oncorhynchus gorbuscha) spawners in the Fraser River

    Carl James Schwarz, Carolyn Gail Taylor , Journal of Fisheries and Aquatic Science ,  2011
    R

    Free

  • Genetic stock composition of marine bycatch reveals disproportional impacts on depleted river herring genetic stocks

    Daniel J. Hasselman, Eric C. Anderson, Emily E. Argo, N. David Bethoney, Stephen R. Gephard, David M. Post, Bradley P. Schondelmeier, Thomas F. Schultz, Theodore V. Willis, Eric P. Palkovacs , Journal of Fisheries and Aquatic Science ,  2015
    R

    Free

  • Spatial planning for fisheries in the Northern Adriatic: working toward viable and sustainable fishing

    Francois Bastardie, Silvia Angelini, Luca Bolognini, Federico Fuga, Chiara Manfredi, Michela Martinelli, J. Rasmus Nielsen, Alberto Santojanni, Giuseppe Scarcella, Fabio Grati , Journal of Fisheries and Aquatic Science ,  2017
    C

    Free

  • A Novel Method to Estimate Prey Contributions to Predator Diets

    Pamela E. Moriarty, Timothy E. Essington, Eric J. Ward , Journal of Fisheries and Aquatic Science ,  2016
    R

    Free

  • Love the one you’re with: genomic evidence of panmixia in the sablefish (Anoplopoma fimbria)

    Andrew J. Jasonowicz, Frederick W. Goetz, Giles W. Goetz, Krista M. Nichols , Journal of Fisheries and Aquatic Science ,  2016
    R

    Free

  • Assessing the recovery of an Antarctic predator from historical exploitation

    Alexandre N. Zerbini, Grant Adams, John Best, Phillip J. Clapham, Jennifer A. Jackson, Andre E. Punt , Journal of Fisheries and Aquatic Science ,  2019
    R

    Free

  • PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses

    Shaun Purcell, Benjamin Neale, Kathe Todd-Brown, Lori Thomas, Manuel A.R. Ferreira, David Bender, Julian Maller, Pamela Sklar, Paul I.W. de Bakker, Mark J. Daly, Pak C. Sham , Journal of Fisheries and Aquatic Science ,  2007
    R

    Free

  • Investigating the association of fish abundance and biomass with cold-water corals in the deep Northeast Atlantic Ocean using a generalized linear modelling approach

    Matthias F. Biber, Gerard C.A. Duineveld, Marc S.S. Lavaleye, Andrew J. Davies, Magda J.N. Bergman, Inge M.J. van den Beld , Journal of Fisheries and Aquatic Science ,  2013
    R

    Free

  • Previsual symptoms of Xylella fastidiosa infection revealed in spectral plant-trait alterations

    P. J. Zarco-Tejada, C. Camino, P. S. A. Beck, R. Calderon, A. Hornero, R. Hernández-Clemente, T. Kattenborn, M. Montes-Borrego, L. Susca, M. Morelli, V. Gonzalez-Dugo, P. R. J. North, B. B. Landa, D. Boscia, M. Saponari, J. A. Navas-Cortes , Hornero ,  2018
    R

    Free

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