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FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild
Nhu H. Nguyen, Zewei Song, Scott T. Bates, Sara Branco, Leho Tedersoo, Jon Menke, Jonathan S. Schilling, Peter G. Kennedy , Biology and Fertility of Soils , 2015
Python
Free
FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild
Nhu H. Nguyen, Zewei Song, Scott T. Bates, Sara Branco, Leho Tedersoo, Jon Menke, Jonathan S. Schilling, Peter G. Kennedy , European Journal of Plant Pathology , 2015
Python
Free
Toward integration of genomic selection with crop modelling: the development of an integrated approach to predicting rice heading dates
Akio Onogi, Maya Watanabe, Toshihiro Mochizuki, Takeshi Hayashi, Hiroshi Nakagawa, Toshihiro Hasegawa, Hiroyoshi Iwata , Theoretical and Applied Genetics , 2016
R
Free
Single and multiple phenotype QTL analyses of downy mildew resistance in interspecific grapevines
Konstantin Divilov, Paola Barba, Lance Cadle-Davidson, Bruce I. Reisch , Theoretical and Applied Genetics , 2018
R
Free
The dynamic life of arbuscular mycorrhizal fungal symbionts
Elizabeth M. Bach, Giselle Narvaez‐Rivera, Kira Murray, Jonathan T. Bauer, Kirsten S. Hofmockel , GCB Bioenergy , 2018
SAS
Free
Response of macrophyte traits to herbivory and neighboring species: integration of the functional trait framework in the context of ecological invasions
Lise Thouvenot, Benoit Gauzens, Jacques Haury, Gabrielle Thiébaut , Plant Science , 2019
R
Free
Temperature controls phenology in continuously flowering Protea species of subtropical Africa
Barnabas H. Daru, Matthew M. Kling, Emily K. Meineke, Abraham E. Wyk , Plant Science , 2019
R
Free
Light modulates ethylene synthesis, signaling, and downstream transcriptional networks to control plant development.
Alexandria F. Harkey, Gyeong Mee Yoon, Dong Hye Seo, Alison DeLong, Gloria K. Muday , Plant Science , 2019
HTML
Free
Parental Expression Variation of Small RNAs Is Negatively Correlated with Grain Yield Heterosis in a Maize Breeding Population
Felix Seifert, Alexander Thiemann, Robert Grant-Downton, Susanne Edelmann, Dominika Rybka, Tobias A. Schrag, Matthias Frisch, Hugh G. Dickinson, Albrecht E. Melchinger, Stefan Scholten , Plant Science , 2018
Java
Free
Improving development efficiency through decision analysis: Reservoir protection in Burkina Faso
Denis Lanzanova, Cory Whitney, Keith Shepherd, Eike Luedeling , Agricultural Water Management , 2019
HTML
Free
Spatial patterns of seasonal crop production suggest coordination within and across dryland agricultural systems of Hawaiʻi Island
Aurora K. Kagawa-Viviani, Noa Kekuewa Lincoln, Seth Quintus, Matthew P. Lucas, Thomas W. Giambelluca , Agricultural Systems , 2018
R
Free
Plant factories; crop transpiration and energy balance
Luuk Graamans, Andy van den Dobbelsteen, Esther Meinen, Cecilia Stanghellini , Agricultural Systems , 2017
Python
Free
Genomics and Taxonomy in Diagnostics for Food Security: soft-rotting enterobacterial plant pathogens
Leighton Pritchard, Rachel H. Glover, Sonia Humphris, John G. Elphinstone, Ian K. Toth , Food Security , 2015
Makefile
Free
The bias of a two-dimensional view: comparing two-dimensional and three-dimensional mesophyll surface area estimates using noninvasive imaging
Guillaume Théroux‐Rancourt, J. Mason Earles, Matthew E. Gilbert, Maciej A. Zwieniecki, C. Kevin Boyce, Andrew J. McElrone, Craig R. Brodersen , Journal of Plant Physiology , 2017
R
Free
An in-field automatic wheat disease diagnosis system
Jiang Lu, Jie Hu, Guannan Zhao, Fenghua Mei, Changshui Zhang , Computers and Electronics in Agriculture , 2017
Python
Free
Deep learning for classification and severity estimation of coffee leaf biotic stress
José G.M. Esgario, Renato A. Krohling, José A. Ventura , Computers and Electronics in Agriculture , 2020
JavaScript
Free
Segmentation of lettuce in coloured 3D point clouds for fresh weight estimation
Anders Krogh Mortensen, Asher Bender, Brett Whelan, Margaret M. Barbour, Salah Sukkarieh, Henrik Karstoft, René Gislum , Computers and Electronics in Agriculture , 2018
C++
Free
Application note: An open-source JavaScript library to simulate dairy cows and young stock, their growth, requirements and diets
J. Vaillant, L. Baldinger , Computers and Electronics in Agriculture , 2015
JavaScript
Free
Computing uncertainty in the optimum nitrogen rate using a generalized cost function
Tyler J. Nigon, Ce Yang, David J. Mulla, Daniel E. Kaiser , Computers and Electronics in Agriculture , 2019
Jupyter Notebook
Free
Storage time prediction of pork by Computational Intelligence
Ana Paula A.C. Barbon, Sylvio Barbon, Rafael Gomes Mantovani, Estefânia Mayumi Fuzyi, Louise Manha Peres, Ana Maria Bridi , Computers and Electronics in Agriculture , 2016
R
Free
Weed detection in soybean crops using ConvNets
Alessandro dos Santos Ferreira, Daniel Matte Freitas, Gercina Gonçalves da Silva, Hemerson Pistori, Marcelo Theophilo Folhes , Computers and Electronics in Agriculture , 2017
Jupyter Notebook
Free
Detection of grapevine yellows symptoms in Vitis vinifera L. with artificial intelligence
Albert Cruz, Yiannis Ampatzidis, Roberto Pierro, Alberto Materazzi, Alessandra Panattoni, Luigi De Bellis, Andrea Luvisi , Computers and Electronics in Agriculture , 2018
CSS
Free
Rice Classification Using Spatio-Spectral Deep Convolutional Neural Network
Itthi Chatnuntawech, Kittipong Tantisantisom, Paisan Khanchaitit, Thitikorn Boonkoom, Berkin Bilgic, Ekapol Chuangsuwanich , Computers and Electronics in Agriculture , 2019
Python
Free
Illumination invariant segmentation of vegetation for time series wheat images based on decision tree model
Wei Guo, Uday K. Rage, Seishi Ninomiya , Computers and Electronics in Agriculture , 2013
Matlab
Free
A computer model for particle-like simulation in broiler houses
B.H. Cervelin, D. Conti, M.A. Diniz-Ehrhardt, J.M. Martínez , Computers and Electronics in Agriculture , 2017
Fortran
Free
A new SAS program for behavioral analysis of electrical penetration graph data
Timothy A. Ebert, Elaine A. Backus, Miguel Cid, Alberto Fereres, Michael E. Rogers , Computers and Electronics in Agriculture , 2015
SAS
Free
A new SAS program for behavioral analysis of electrical penetration graph data
Timothy A. Ebert, Elaine A. Backus, Miguel Cid, Alberto Fereres, Michael E. Rogers , Communications in Biometry and Crop Science , 2015
SAS
Free
Fruit detection, yield prediction and canopy geometric characterization using LiDAR with forced air flow
Jordi Gené-Mola, Eduard Gregorio, Fernando Auat Cheein, Javier Guevara, Jordi Llorens, Ricardo Sanz-Cortiella, Alexandre Escolà, Joan R. Rosell-Polo , Computers and Electronics in Agriculture , 2019
MATLAB
Free
An open-source spatial analysis system for embedded systems
Andre Luiz de Freitas Coelho, Daniel Marçal de Queiroz, Domingos Sárvio Magalhães Valente, Francisco de Assis de Carvalho Pinto , Computers and Electronics in Agriculture , 2018
Python
Free
Testing Database-Centric Applications for Causes of Database Deadlocks
Mark Grechanik, B.M. Mainul Hossain, Ugo Buy , Computers and Electronics in Agriculture , 2013
Scala
Free
Weed detection in soybean crops using ConvNets
Alessandro dos Santos Ferreira, Daniel Matte Freitas, Gercina Gonçalves da Silva, Hemerson Pistori, Marcelo Theophilo Folhes , Computers and Electronics in Agriculture , 2017
Python
Free
Comparative accuracies of artificial neural networks and discriminant analysis in predicting forest cover types from cartographic variables
Jock A. Blackard, Denis J. Dean , Computers and Electronics in Agriculture , 2002
Jupyter Notebook
Free
Comparison of ground cover estimates from experiment plots in cotton, sorghum and sugarcane based on images and ortho-mosaics captured by UAV
Tao Duan, Bangyou Zheng, Wei Guo, Seishi Ninomiya, Yan Guo, Scott C. Chapman , Functional Plant Biology , 2016
MATLAB
Free
Non-destructive Detection of Blueberry Skin Pigments and Fruit Intrinsic Qualities Based on Deep Learning
Changhong Mu, Zebin Yuan, Xiuqin Ouyang, Pu Sun, Bo Wang , Journal of the Science of Food and Agriculture , 2020
MATLAB
Free
Complex responses of global insect pests to climate change
Philipp Lehmann, Tea Ammunét, Madeleine Barton, Andrea Battisti, Sanford D Eigenbrode, Jane Uhd Jepsen, Gregor Kalinkat, Seppo Neuvonen, Pekka Niemelä, John S Terblanche, Bjørn Økland, Christer Björkman , Agronomy , 2020
R
Free
A modular and parallelized watershed modeling framework
Liang-Jun Zhu, Junzhi Liu, Cheng-Zhi Qin, A-Xing Zhu , Journal of Soils and Water Conservation , 2019
C++
Free
Best Management Practices Optimization at Watershed Scale: Incorporating Spatial Topology among Fields
Mazdak Arabi, Rao S. Govindaraju, Mohamed M. Hantush , Journal of Soils and Water Conservation , 2006
C++
Free
Transcriptome profiling helps to identify potential and true molecular switches of stealth to brute force behavior in Pectobacterium atrosepticum during systemic colonization of tobacco plants
Vladimir Gorshkov, Rim Gubaev, Olga Petrova, Amina Daminova, Natalia Gogoleva, Marina Ageeva, Olga Parfirova, Maxim Prokchorchik, Yevgeny Nikolaichik, Yuri Gogolev , European Journal of Plant Pathology , 2018
R
Free
Be-Breeder – Learning: a new tool for teaching and learning plant breeding principles
Roberto Fritsche-Neto, Filipe Inácio Matias , Crop Breeding and Applied Biotechnology , 2016
Roff
Free
MARPLE, a point-of-care, strain-level disease diagnostics and surveillance tool for complex fungal pathogens
Guru V. Radhakrishnan, Nicola M. Cook, Vanessa Bueno-Sancho, Clare M. Lewis, Antoine Persoons, Abel Debebe Mitiku, Matthew Heaton, Phoebe E. Davey, Bekele Abeyo, Yoseph Alemayehu, Ayele Badebo, Marla Barnett, Ruth Bryant, Jeron Chatelain, Xianming Chen, Suomeng Dong, Tina Henriksson, Sarah Holdgate, Annemarie F. Justesen, Jay Kalous, Zhensheng Kang, Szymon Laczny, Jean-Paul Legoff, Driecus Lesch, Tracy Richards, Harpinder S. Randhawa, Tine Thach, Meinan Wang, Mogens S. Hovmøller, David P. Hodson, Diane G. O. Saunders , Plant Disease , 2019
Python
Free
Nitrogen Fertilizers Shape the Composition and Predicted Functions of the Microbiota of Field-Grown Tomato Plants
Federica Caradonia, Domenico Ronga, Marcello Catellani, Cleber Vinícius Giaretta Azevedo, Rodrigo Alegria Terrazas, Senga Robertson-Albertyn, Enrico Francia, Davide Bulgarelli , Rhizosphere , 2019
R
Free
Unraveling the Composition of the Root-Associated Bacterial Microbiota of Phragmites australis and Typha latifolia
Laura Pietrangelo, Antonio Bucci, Lucia Maiuro, Davide Bulgarelli, Gino Naclerio , Rhizosphere , 2018
R
Free
Production Rigidity, Input Lumpiness, Efficiency, and the Technological Hurdle of Quebec Dairy Farms
Bruno Larue, Alphonse Singbo, Sébastien Pouliot , Canadian Journal of Agricultural Economics , 2017
Stata
Free
Antibiotic-Induced Alterations of the Murine Gut Microbiota and Subsequent Effects on Colonization Resistance against Clostridium difficile
Alyxandria M. Schubert, Hamide Sinani, Patrick D. Schloss , Spore , 2015
R
Free
Lifecycle Progression and Sexual Development of the Apicomplexan Parasite Cryptosporidium parvum
Jayesh Tandel, Elizabeth D. English, Adam Sateriale, Jodi A. Gullicksrud, Daniel P. Beiting, Megan C. Sullivan, Brittain Pinkston, Boris Striepen , Spore , 2019
HTML
Free
Empirical evidence that metabolic theory describes the temperature dependency of within-host parasite dynamics
Devin Kirk, Natalie Jones, Stephanie Peacock, Jessica Phillips, Péter K. Molnár, Martin Krkošek, Pepijn Luijckx , Spore , 2018
R
Free
Convergent evolution of complex genomic rearrangements in two fungal meiotic drive elements
Jesper Svedberg, Sara Hosseini, Jun Chen, Aaron A. Vogan, Iva Mozgova, Lars Hennig, Pennapa Manitchotpisit, Anna Abusharekh, Thomas M. Hammond, Martin Lascoux, Hanna Johannesson , Spore , 2018
Python
Free

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

Toward integration of genomic selection with crop modelling: the development of an integrated approach to predicting rice heading dates

Single and multiple phenotype QTL analyses of downy mildew resistance in interspecific grapevines

The dynamic life of arbuscular mycorrhizal fungal symbionts

Response of macrophyte traits to herbivory and neighboring species: integration of the functional trait framework in the context of ecological invasions

Temperature controls phenology in continuously flowering Protea species of subtropical Africa

Light modulates ethylene synthesis, signaling, and downstream transcriptional networks to control plant development.

Parental Expression Variation of Small RNAs Is Negatively Correlated with Grain Yield Heterosis in a Maize Breeding Population

Improving development efficiency through decision analysis: Reservoir protection in Burkina Faso

Spatial patterns of seasonal crop production suggest coordination within and across dryland agricultural systems of Hawaiʻi Island

Plant factories; crop transpiration and energy balance

Genomics and Taxonomy in Diagnostics for Food Security: soft-rotting enterobacterial plant pathogens

The bias of a two-dimensional view: comparing two-dimensional and three-dimensional mesophyll surface area estimates using noninvasive imaging

An in-field automatic wheat disease diagnosis system

Deep learning for classification and severity estimation of coffee leaf biotic stress

Segmentation of lettuce in coloured 3D point clouds for fresh weight estimation

Application note: An open-source JavaScript library to simulate dairy cows and young stock, their growth, requirements and diets

Computing uncertainty in the optimum nitrogen rate using a generalized cost function

Storage time prediction of pork by Computational Intelligence

Weed detection in soybean crops using ConvNets

Detection of grapevine yellows symptoms in Vitis vinifera L. with artificial intelligence

Rice Classification Using Spatio-Spectral Deep Convolutional Neural Network

Illumination invariant segmentation of vegetation for time series wheat images based on decision tree model

A computer model for particle-like simulation in broiler houses

A new SAS program for behavioral analysis of electrical penetration graph data

A new SAS program for behavioral analysis of electrical penetration graph data

Fruit detection, yield prediction and canopy geometric characterization using LiDAR with forced air flow

An open-source spatial analysis system for embedded systems

Testing Database-Centric Applications for Causes of Database Deadlocks

Weed detection in soybean crops using ConvNets

Comparative accuracies of artificial neural networks and discriminant analysis in predicting forest cover types from cartographic variables

Comparison of ground cover estimates from experiment plots in cotton, sorghum and sugarcane based on images and ortho-mosaics captured by UAV

Non-destructive Detection of Blueberry Skin Pigments and Fruit Intrinsic Qualities Based on Deep Learning

Complex responses of global insect pests to climate change

A modular and parallelized watershed modeling framework

Best Management Practices Optimization at Watershed Scale: Incorporating Spatial Topology among Fields

Transcriptome profiling helps to identify potential and true molecular switches of stealth to brute force behavior in Pectobacterium atrosepticum during systemic colonization of tobacco plants

Be-Breeder – Learning: a new tool for teaching and learning plant breeding principles

MARPLE, a point-of-care, strain-level disease diagnostics and surveillance tool for complex fungal pathogens

Nitrogen Fertilizers Shape the Composition and Predicted Functions of the Microbiota of Field-Grown Tomato Plants

Unraveling the Composition of the Root-Associated Bacterial Microbiota of Phragmites australis and Typha latifolia

Production Rigidity, Input Lumpiness, Efficiency, and the Technological Hurdle of Quebec Dairy Farms

Antibiotic-Induced Alterations of the Murine Gut Microbiota and Subsequent Effects on Colonization Resistance against Clostridium difficile

Lifecycle Progression and Sexual Development of the Apicomplexan Parasite Cryptosporidium parvum

Empirical evidence that metabolic theory describes the temperature dependency of within-host parasite dynamics

Convergent evolution of complex genomic rearrangements in two fungal meiotic drive elements